在R中创建连续的热图

我有一系列x和y坐标，每个坐标都有一个与它们相连的距离。我想创建一个热图来显示x和y范围内每个点的平均距离作为热图。由于这些点不是以格子形状相互均匀分布，所以该方法需要某种平滑函数来对数据进行聚类并计算每个点附近的平均值，然后用一种颜色表示该平均值。在R中创建连续的热图

到目前为止，使用ggplot2，我只能找到像stat_density2d和geom_tile的方法，它只适用于显示点密度和代表均匀间隔点（据我所知）。

理想的情况下，将遵循同样的原则，因为这形象： enter image description here

，其颜色是基于在附近指定的点，即使点的密度和布局并不均匀分配。

我不想创建矩阵形式的热图这样的形象： enter image description here

其中一个表是颜色编码。相反，我想创建一个使用非均匀分布的x和y坐标的连续热图，实际上，它显示了将数据分解为无限多个矩形的极限。这可能不是该函数使用的实际方法，但它提供了我所需要的一般概念。

下面是一些样本数据：

data=data.frame(x=c(1,1,2,2,3,4,5,6,7,7,8,9), 
    y=c(2,4,5,1,3,8,4,8,1,1,6,9), 
    distance=c(66,84,93,76,104,29,70,19,60,50,46,36))

我如何可以与距离覆盖数的整个范围，如提供在第一环节的情节色标热图？

任何帮助，非常感谢！

来源

2012-07-17 user1532996

看看这个[link]（http://stackoverflow.com/q/10981324/707145）。 – MYaseen208 2012-07-17 21:57:22

在该示例中，您必须手动将数据剪切成离散矩形。我希望能够根据需要切断数据并创建连续的热图。 – user1532996 2012-07-18 14:39:53

这里有一个用户编写的函数，产生热图使用GGPLOT2：

http://www.r-bloggers.com/ggheat-a-ggplot2-style-heatmap-function/

他们的榜样形象：

example

如果你想要的是一个地形图作为在你的例子中，有很多工具可以使用（只需在“地形图”下搜索）

最后，还有的isarithmic地图，这只是表明，你需要明确，如果你想要一些平滑纳入你想要做什么： http://dsparks.wordpress.com/2011/10/24/isarithmic-maps-of-public-opinion-data/

来源

2012-07-17 21:30:59

胡人。您的答案出现在“低质量帖子”审核中。也许你可以添加一些关于文章内容的描述？ http://meta.stackexchange.com/questions/8231/are-answers-that-just-contain-links-elsewhere-really-good-answers。 – GSee 2012-07-17 21:57:38

相关，简明扼要，不言自明;恕我直言，这个答案非常好。然而，这个问题可以使用一些最小的自包含的例子。 – baptiste 2012-07-17 22:11:15

@baptiste我们所要求的仅仅是为了防止链接腐烂，我们可以在链接中找到的简要总结。 – joran 2012-07-17 22:21:12

ggplot2::ggfluctuation(data, type="colour")

我不能给出所有这些数据但head低于dput结构。

structure(list(X1 = 236:241, HomeTeam = structure(c(8L, 19L, 
37L, 4L, 6L, 15L), .Label = c("Arizona Cardinals", "Atlanta Falcons", 
"Baltimore Ravens", "Buffalo Bills", "Carolina Panthers", "Chicago Bears", 
"Cincinnati Bengals", "Cleveland Browns", "Dallas Cowboys", "Denver Broncos", 
"Detroit Lions", "Green Bay Packers", "Houston Oilers", "Houston Texans", 
"Indianapolis Colts", "Jacksonville Jaguars", "Kansas City Chiefs", 
"Los Angeles Raiders", "Los Angeles Rams", "Miami Dolphins", 
"Minnesota Vikings", "New England Patriots", "New Orleans Saints", 
"New York Giants", "New York Jets", "Oakland Raiders", "Philadelphia Eagles", 
"Phoenix Cardinals", "Pittsburgh Steelers", "San Diego Chargers", 
"San Francisco 49ers", "Seattle Seahawks", "St. Louis Rams", 
"Tampa Bay Buccaneers", "Tennessee Oilers", "Tennessee Titans", 
"Washington Redskins"), class = "factor"), AwayTeam = structure(c(9L, 
28L, 11L, 20L, 21L, 22L), .Label = c("Arizona Cardinals", "Atlanta Falcons", 
"Baltimore Ravens", "Buffalo Bills", "Carolina Panthers", "Chicago Bears", 
"Cincinnati Bengals", "Cleveland Browns", "Dallas Cowboys", "Denver Broncos", 
"Detroit Lions", "Green Bay Packers", "Houston Oilers", "Houston Texans", 
"Indianapolis Colts", "Jacksonville Jaguars", "Kansas City Chiefs", 
"Los Angeles Raiders", "Los Angeles Rams", "Miami Dolphins", 
"Minnesota Vikings", "New England Patriots", "New Orleans Saints", 
"New York Giants", "New York Jets", "Oakland Raiders", "Philadelphia Eagles", 
"Phoenix Cardinals", "Pittsburgh Steelers", "San Diego Chargers", 
"San Francisco 49ers", "Seattle Seahawks", "St. Louis Rams", 
"Tampa Bay Buccaneers", "Tennessee Oilers", "Tennessee Titans", 
"Washington Redskins"), class = "factor"), Date = structure(c(45L, 
45L, 45L, 45L, 45L, 45L), .Label = c("1990-09-09", "1990-09-10", 
"1990-09-16", "1990-09-17", "1990-09-23", "1990-09-24", "1990-09-30", 
"1990-10-01", "1990-10-07", "1990-10-08", "1990-10-14", "1990-10-15", 
"1990-10-18", "1990-10-21", "1990-10-22", "1990-10-28", "1990-10-29", 
"1990-11-04", "1990-11-05", "1990-11-11", "1990-11-12", "1990-11-18", 
"1990-11-19", "1990-11-22", "1990-11-25", "1990-11-26", "1990-12-02", 
"1990-12-03", "1990-12-09", "1990-12-10", "1990-12-15", "1990-12-16", 
"1990-12-17", "1990-12-22", "1990-12-23", "1990-12-29", "1990-12-30", 
"1990-12-31", "1991-01-05", "1991-01-06", "1991-01-12", "1991-01-13", 
"1991-01-20", "1991-01-27", "1991-09-01", "1991-09-02", "1991-09-08", 
"1991-09-09", "1991-09-15", "1991-09-16", "1991-09-22", "1991-09-23", 
"1991-09-29", "1991-09-30", "1991-10-06", "1991-10-07", "1991-10-13", 
"1991-10-14", "1991-10-17", "1991-10-20", "1991-10-21", "1991-10-27", 
"1991-10-28", "1991-11-03", "1991-11-04", "1991-11-10", "1991-11-11", 
"1991-11-17", "1991-11-18", "1991-11-24", "1991-11-25", "1991-11-28", 
"1991-12-01", "1991-12-02", "1991-12-08", "1991-12-09", "1991-12-14", 
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"1991-12-28", "1991-12-29", "1992-01-04", "1992-01-05", "1992-01-12", 
"1992-01-26", "1992-09-06", "1992-09-07", "1992-09-13", "1992-09-14", 
"1992-09-20", "1992-09-21", "1992-09-27", "1992-09-28", "1992-10-04", 
"1992-10-05", "1992-10-11", "1992-10-12", "1992-10-15", "1992-10-18", 
"1992-10-19", "1992-10-25", "1992-10-26", "1992-11-01", "1992-11-02", 
"1992-11-08", "1992-11-09", "1992-11-15", "1992-11-16", "1992-11-22", 
"1992-11-23", "1992-11-26", "1992-11-29", "1992-11-30", "1992-12-03", 
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"1993-12-05", "1993-12-06", "1993-12-11", "1993-12-12", "1993-12-13", 
"1993-12-18", "1993-12-19", "1993-12-20", "1993-12-25", "1993-12-26", 
"1993-12-27", "1993-12-31", "1994-01-02", "1994-01-03", "1994-01-08", 
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"1994-09-04", "1994-09-05", "1994-09-11", "1994-09-12", "1994-09-18", 
"1994-09-19", "1994-09-25", "1994-09-26", "1994-10-02", "1994-10-03", 
"1994-10-09", "1994-10-10", "1994-10-13", "1994-10-16", "1994-10-17", 
"1994-10-20", "1994-10-23", "1994-10-24", "1994-10-30", "1994-10-31", 
"1994-11-06", "1994-11-07", "1994-11-13", "1994-11-14", "1994-11-20", 
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"2006-12-14", "2006-12-16", "2006-12-17", "2006-12-18", "2006-12-21", 
"2006-12-23", "2006-12-24", "2006-12-25", "2006-12-30", "2006-12-31", 
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"2007-09-17", "2007-09-23", "2007-09-24", "2007-09-30", "2007-10-01", 
"2007-10-07", "2007-10-08", "2007-10-14", "2007-10-15", "2007-10-21", 
"2007-10-22", "2007-10-28", "2007-10-29", "2007-11-04", "2007-11-05", 
"2007-11-11", "2007-11-12", "2007-11-18", "2007-11-19", "2007-11-22", 
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"2008-09-22", "2008-09-28", "2008-09-29", "2008-10-05", "2008-10-06", 
"2008-10-12", "2008-10-13", "2008-10-19", "2008-10-20", "2008-10-26", 
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"2008-11-10", "2008-11-13", "2008-11-16", "2008-11-17", "2008-11-20", 
"2008-11-23", "2008-11-24", "2008-11-27", "2008-11-30", "2008-12-01", 
"2008-12-04", "2008-12-07", "2008-12-08", "2008-12-11", "2008-12-14", 
"2008-12-15", "2008-12-18", "2008-12-20", "2008-12-21", "2008-12-22", 
"2008-12-28", "2009-01-03", "2009-01-04", "2009-01-10", "2009-01-11", 
"2009-01-18", "2009-02-01", "2009-09-10", "2009-09-13", "2009-09-14", 
"2009-09-20", "2009-09-21", "2009-09-27", "2009-09-28", "2009-10-04", 
"2009-10-05", "2009-10-11", "2009-10-12", "2009-10-18", "2009-10-19", 
"2009-10-25", "2009-10-26", "2009-11-01", "2009-11-02", "2009-11-08", 
"2009-11-09", "2009-11-12", "2009-11-15", "2009-11-16", "2009-11-19", 
"2009-11-22", "2009-11-23", "2009-11-26", "2009-11-29", "2009-11-30", 
"2009-12-03", "2009-12-06", "2009-12-07", "2009-12-10", "2009-12-13", 
"2009-12-14", "2009-12-17", "2009-12-19", "2009-12-20", "2009-12-21", 
"2009-12-25", "2009-12-27", "2009-12-28", "2010-01-03", "2010-01-09", 
"2010-01-10", "2010-01-16", "2010-01-17", "2010-01-24", "2010-02-07", 
"2010-09-09", "2010-09-12", "2010-09-13", "2010-09-19", "2010-09-20", 
"2010-09-26", "2010-09-27", "2010-10-03", "2010-10-04", "2010-10-10", 
"2010-10-11", "2010-10-17", "2010-10-18", "2010-10-24", "2010-10-25", 
"2010-10-31", "2010-11-01", "2010-11-07", "2010-11-08", "2010-11-11", 
"2010-11-14", "2010-11-15", "2010-11-18", "2010-11-21", "2010-11-22", 
"2010-11-25", "2010-11-28", "2010-11-29", "2010-12-02", "2010-12-05", 
"2010-12-06", "2010-12-09", "2010-12-12", "2010-12-13", "2010-12-16", 
"2010-12-19", "2010-12-20", "2010-12-23", "2010-12-25", "2010-12-26", 
"2010-12-27", "2010-12-28", "2011-01-02", "2011-01-08", "2011-01-09", 
"2011-01-15", "2011-01-16", "2011-01-23", "2011-02-06"), class = "factor"), 
    Season = c(1991, 1991, 1991, 1991, 1991, 1991), HomeRecord = structure(c(1L, 
    1L, 17L, 17L, 17L, 1L), .Label = c("(0-1-0)", "(0-10-0)", 
    "(0-11-0)", "(0-12-0)", "(0-13-0)", "(0-14-0)", "(0-15-0)", 
    "(0-16-0)", "(0-2-0)", "(0-3-0)", "(0-4-0)", "(0-5-0)", "(0-6-0)", 
    "(0-7-0)", "(0-8-0)", "(0-9-0)", "(1-0-0)", "(1-1-0)", "(1-10-0)", 
    "(1-10-1)", "(1-11-0)", "(1-11-1)", "(1-12-0)", "(1-13-0)", 
    "(1-14-0)", "(1-15-0)", "(1-2-0)", "(1-3-0)", "(1-4-0)", 
    "(1-5-0)", "(1-6-0)", "(1-7-0)", "(1-8-0)", "(1-8-1)", "(1-9-0)", 
    "(1-9-1)", "(10-0-0)", "(10-1-0)", "(10-2-0)", "(10-3-0)", 
    "(10-4-0)", "(10-5-0)", "(10-5-1)", "(10-6-0)", "(10-6-1)", 
    "(10-7-0)", "(10-7-1)", "(10-8-0)", "(11-0-0)", "(11-1-0)", 
    "(11-2-0)", "(11-3-0)", "(11-4-0)", "(11-5-0)", "(11-5-1)", 
    "(11-6-0)", "(11-6-1)", "(11-7-0)", "(11-7-1)", "(11-8-0)", 
    "(12-0-0)", "(12-1-0)", "(12-2-0)", "(12-3-0)", "(12-4-0)", 
    "(12-5-0)", "(12-6-0)", "(12-7-0)", "(12-8-0)", "(13-0-0)", 
    "(13-1-0)", "(13-2-0)", "(13-3-0)", "(13-4-0)", "(13-5-0)", 
    "(13-6-0)", "(14-0-0)", "(14-1-0)", "(14-2-0)", "(14-3-0)", 
    "(14-4-0)", "(14-5-0)", "(14-6-0)", "(15-0-0)", "(15-1-0)", 
    "(15-2-0)", "(15-3-0)", "(15-4-0)", "(15-5-0)", "(16-0-0)", 
    "(16-1-0)", "(16-2-0)", "(16-3-0)", "(16-4-0)", "(17-0-0)", 
    "(17-2-0)", "(18-0-0)", "(18-1-0)", "(2-0-0)", "(2-1-0)", 
    "(2-10-0)", "(2-11-0)", "(2-11-1)", "(2-12-0)", "(2-13-0)", 
    "(2-14-0)", "(2-2-0)", "(2-3-0)", "(2-4-0)", "(2-5-0)", "(2-6-0)", 
    "(2-7-0)", "(2-8-0)", "(2-9-0)", "(3-0-0)", "(3-1-0)", "(3-10-0)", 
    "(3-11-0)", "(3-11-1)", "(3-12-0)", "(3-13-0)", "(3-2-0)", 
    "(3-3-0)", "(3-4-0)", "(3-5-0)", "(3-6-0)", "(3-7-0)", "(3-8-0)", 
    "(3-9-0)", "(4-0-0)", "(4-1-0)", "(4-10-0)", "(4-11-0)", 
    "(4-11-1)", "(4-12-0)", "(4-2-0)", "(4-3-0)", "(4-4-0)", 
    "(4-5-0)", "(4-6-0)", "(4-6-1)", "(4-7-0)", "(4-7-1)", "(4-8-0)", 
    "(4-8-1)", "(4-9-0)", "(5-0-0)", "(5-1-0)", "(5-10-0)", "(5-11-0)", 
    "(5-2-0)", "(5-3-0)", "(5-3-1)", "(5-4-0)", "(5-4-1)", "(5-5-0)", 
    "(5-5-1)", "(5-6-0)", "(5-6-1)", "(5-7-0)", "(5-8-0)", "(5-8-1)", 
    "(5-9-0)", "(6-0-0)", "(6-1-0)", "(6-10-0)", "(6-2-0)", "(6-3-0)", 
    "(6-3-1)", "(6-4-0)", "(6-4-1)", "(6-5-0)", "(6-5-1)", "(6-6-0)", 
    "(6-6-1)", "(6-7-0)", "(6-7-1)", "(6-8-0)", "(6-8-1)", "(6-9-0)", 
    "(6-9-1)", "(7-0-0)", "(7-1-0)", "(7-2-0)", "(7-3-0)", "(7-3-1)", 
    "(7-4-0)", "(7-4-1)", "(7-5-0)", "(7-5-1)", "(7-6-0)", "(7-6-1)", 
    "(7-7-0)", "(7-7-1)", "(7-8-0)", "(7-9-0)", "(8-0-0)", "(8-1-0)", 
    "(8-10-0)", "(8-2-0)", "(8-3-0)", "(8-3-1)", "(8-4-0)", "(8-4-1)", 
    "(8-5-0)", "(8-5-1)", "(8-6-0)", "(8-6-1)", "(8-7-0)", "(8-7-1)", 
    "(8-8-0)", "(8-9-0)", "(9-0-0)", "(9-1-0)", "(9-2-0)", "(9-3-0)", 
    "(9-4-0)", "(9-5-0)", "(9-5-1)", "(9-6-0)", "(9-6-1)", "(9-7-0)", 
    "(9-8-0)", "(9-9-0)"), class = "factor"), AwayRecord = structure(c(17L, 
    17L, 1L, 1L, 1L, 17L), .Label = c("(0-1-0)", "(0-10-0)", 
    "(0-11-0)", "(0-12-0)", "(0-13-0)", "(0-14-0)", "(0-15-0)", 
    "(0-16-0)", "(0-2-0)", "(0-3-0)", "(0-4-0)", "(0-5-0)", "(0-6-0)", 
    "(0-7-0)", "(0-8-0)", "(0-9-0)", "(1-0-0)", "(1-1-0)", "(1-10-0)", 
    "(1-10-1)", "(1-11-0)", "(1-11-1)", "(1-12-0)", "(1-13-0)", 
    "(1-14-0)", "(1-15-0)", "(1-2-0)", "(1-3-0)", "(1-4-0)", 
    "(1-5-0)", "(1-6-0)", "(1-7-0)", "(1-8-0)", "(1-8-1)", "(1-9-0)", 
    "(1-9-1)", "(10-0-0)", "(10-1-0)", "(10-2-0)", "(10-3-0)", 
    "(10-4-0)", "(10-5-0)", "(10-5-1)", "(10-6-0)", "(10-6-1)", 
    "(10-7-0)", "(10-7-1)", "(10-8-0)", "(11-0-0)", "(11-1-0)", 
    "(11-2-0)", "(11-3-0)", "(11-4-0)", "(11-5-0)", "(11-5-1)", 
    "(11-6-0)", "(11-6-1)", "(11-7-0)", "(11-7-1)", "(11-8-0)", 
    "(12-0-0)", "(12-1-0)", "(12-2-0)", "(12-3-0)", "(12-4-0)", 
    "(12-5-0)", "(12-6-0)", "(12-7-0)", "(12-8-0)", "(13-0-0)", 
    "(13-1-0)", "(13-2-0)", "(13-3-0)", "(13-4-0)", "(13-5-0)", 
    "(13-6-0)", "(14-0-0)", "(14-1-0)", "(14-2-0)", "(14-3-0)", 
    "(14-4-0)", "(14-5-0)", "(14-6-0)", "(15-0-0)", "(15-1-0)", 
    "(15-2-0)", "(15-3-0)", "(15-4-0)", "(15-5-0)", "(16-0-0)", 
    "(16-1-0)", "(16-2-0)", "(16-3-0)", "(16-4-0)", "(17-0-0)", 
    "(17-2-0)", "(18-0-0)", "(18-1-0)", "(2-0-0)", "(2-1-0)", 
    "(2-10-0)", "(2-11-0)", "(2-11-1)", "(2-12-0)", "(2-13-0)", 
    "(2-14-0)", "(2-2-0)", "(2-3-0)", "(2-4-0)", "(2-5-0)", "(2-6-0)", 
    "(2-7-0)", "(2-8-0)", "(2-9-0)", "(3-0-0)", "(3-1-0)", "(3-10-0)", 
    "(3-11-0)", "(3-11-1)", "(3-12-0)", "(3-13-0)", "(3-2-0)", 
    "(3-3-0)", "(3-4-0)", "(3-5-0)", "(3-6-0)", "(3-7-0)", "(3-8-0)", 
    "(3-9-0)", "(4-0-0)", "(4-1-0)", "(4-10-0)", "(4-11-0)", 
    "(4-11-1)", "(4-12-0)", "(4-2-0)", "(4-3-0)", "(4-4-0)", 
    "(4-5-0)", "(4-6-0)", "(4-6-1)", "(4-7-0)", "(4-7-1)", "(4-8-0)", 
    "(4-8-1)", "(4-9-0)", "(5-0-0)", "(5-1-0)", "(5-10-0)", "(5-11-0)", 
    "(5-2-0)", "(5-3-0)", "(5-3-1)", "(5-4-0)", "(5-4-1)", "(5-5-0)", 
    "(5-5-1)", "(5-6-0)", "(5-6-1)", "(5-7-0)", "(5-8-0)", "(5-8-1)", 
    "(5-9-0)", "(6-0-0)", "(6-1-0)", "(6-10-0)", "(6-2-0)", "(6-3-0)", 
    "(6-3-1)", "(6-4-0)", "(6-4-1)", "(6-5-0)", "(6-5-1)", "(6-6-0)", 
    "(6-6-1)", "(6-7-0)", "(6-7-1)", "(6-8-0)", "(6-8-1)", "(6-9-0)", 
    "(6-9-1)", "(7-0-0)", "(7-1-0)", "(7-2-0)", "(7-3-0)", "(7-3-1)", 
    "(7-4-0)", "(7-4-1)", "(7-5-0)", "(7-5-1)", "(7-6-0)", "(7-6-1)", 
    "(7-7-0)", "(7-7-1)", "(7-8-0)", "(7-9-0)", "(8-0-0)", "(8-1-0)", 
    "(8-10-0)", "(8-2-0)", "(8-3-0)", "(8-3-1)", "(8-4-0)", "(8-4-1)", 
    "(8-5-0)", "(8-5-1)", "(8-6-0)", "(8-6-1)", "(8-7-0)", "(8-7-1)", 
    "(8-8-0)", "(8-9-0)", "(9-0-0)", "(9-1-0)", "(9-2-0)", "(9-3-0)", 
    "(9-4-0)", "(9-5-0)", "(9-5-1)", "(9-6-0)", "(9-6-1)", "(9-7-0)", 
    "(9-8-0)", "(9-9-0)"), class = "factor"), HomeFinal = c(14L, 
    14L, 45L, 35L, 10L, 7L), AwayFinal = c(26L, 24L, 0L, 31L, 
    6L, 16L), HomeLast = c(4, 4, 5, 5, 0, 7), AwayLast = c(6, 
    4, 0, 1, 6, 6), Winner = c("Away", "Away", "Home", "Home", 
    "Home", "Away")), .Names = c("X1", "HomeTeam", "AwayTeam", 
"Date", "Season", "HomeRecord", "AwayRecord", "HomeFinal", "AwayFinal", 
"HomeLast", "AwayLast", "Winner"), row.names = c(NA, 6L), class = "data.frame")

然后你会这样做。

ggfluctuation(table(gamesWide$HomeLast, gamesWide$AwayLast), type="colour") + labs(x="Away", y="Home") + opts(title="Distribution of Last Digit of Score")

要获得 enter image description here

当然，使用完整的数据集生成图像。这应该可以进一步扩展到不那么对称和矩形的数据。

来源

2012-07-18 01:18:57 Jared

顺便说一句，这个答案刚刚出现在“低质量帖子”评论中。我在''ggfluctuation'中运行了所有的例子，它们都不像我的热图。你能举个例子吗？ – GSee 2012-07-18 01:31:18

为了产生连续的地图不规则隔开的坐标，你首先需要intrapolate规则网格（这里使用包akima的功能interp）：

require(akima) 
data <- data.frame(x=c(1,1,2,2,3,4,5,6,7,7,8,9), 
        y=c(2,4,5,1,3,8,4,8,1,1,6,9), 
        distance=c(66,84,93,76,104,29,70,19,60,50,46,36)) 
resolution <- 0.1 # you can increase the resolution by decreasing this number (warning: the resulting dataframe size increase very quickly) 
a <- interp(x=data$x, y=data$y, z=data$distance, 
      xo=seq(min(data$x),max(data$x),by=resolution), 
      yo=seq(min(data$y),max(data$y),by=resolution), duplicate="mean") 
image(a) #you can of course modify the color palette and the color categories. See ?image for more explanation

enter image description here

或者你可以使用，为绘图本身，功能filled.contour：

filled.contour(a, color.palette=heat.colors)

enter image description here

来源

2012-10-04 11:34:44 plannapus

在R中创建连续的热图

回答

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